miRBase entry: hco-mir-5892b

Stem-loop hco-mir-5892b


Accession
MI0020154
Description
Haemonchus contortus hco-mir-5892b precursor miRNA
Gene family
MIPF0001539; mir-5892


Sequence

cgagccuuccgguccugaaguuugcucagaugauccagauguuagucgcccgcauggaaagcAAUUAACAUUUGGAUCAUCUGAGCgauauucgaggaugcuauucgaagccuguacuccuuauuccaucuacugcac
...((.(((((((.((((.(((((.((....))..))))).))))..))).....)))).))..........((((......(((.....((((((.......)))))).......))).....))))..........

Structure
cgagccuuccgguccugaaguuugcucagaugauccagauguuagucgcccgcauggaaagcAAUUAACAUU    UCAUCU   --Cgaua      ga 
                                                                        UGGA      GAG       uucgag  u
                                                                        ||||      |||       ||||||  g
                                                                        accu      cuc       aagcuu  c
--------------------------------------------------------------cacgucaucu    -uauuc   auguccg      au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5892b

Accession MIMAT0023486
Description Haemonchus contortus hco-miR-5892b mature miRNA
Sequence 63 - AAUUAACAUUUGGAUCAUCUGAGC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4