miRBase entry: hco-mir-5977

Stem-loop hco-mir-5977


Accession
MI0020155
Description
Haemonchus contortus hco-mir-5977 precursor miRNA


Sequence

cgucguuacgcuagagagaauuggacuucugugaaaguggaguguugcuuuauuugaguguuuuguuuuaauugaaugaagUAUGUUUAGUUAUAGAACCACGUucgauucuauuuaugcuuauga
..((((...((((((.((((((((((((((((((...((((....((((((((((((.((........)).))))))))))))..)))).))))))))....)))))))))).)))).))..))))

Structure
cg    uac  -    g          ----        aag    gugu            g  uuu 
  ucgu   gc uaga agaauuggac    uucuguga   ugga    ugcuuuauuuga ug   u
  ||||   || |||| ||||||||||    ||||||||   ||||    |||||||||||| ||    
  agua   cg auuu ucuuagcuUG    AAGAUAUU   AUUU    AUgaaguaaguu au   g
--    -uu  u    a          CACC        --G    --GU            a  uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5977

Accession MIMAT0023487
Description Haemonchus contortus hco-miR-5977 mature miRNA
Sequence 82 - UAUGUUUAGUUAUAGAACCACGU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4