miRBase entry: hco-mir-5985-2

Stem-loop hco-mir-5985-2


Accession
MI0020166
Description
Haemonchus contortus hco-mir-5985-2 precursor miRNA
Gene family
MIPF0001491; mir-5985


Sequence

cgaggauaaAAACACUGACUUGUAACAUCGGCugguggccagccgauguuacaagucaguguuuucauccucgc
(((((((.(((((((((((((((((((((((((((...))))))))))))))))))))))))))).))))))).

Structure
-       a                           u 
 cgaggau aAAACACUGACUUGUAACAUCGGCugg  
 ||||||| ||||||||||||||||||||||||||| g
 gcuccua uuuugugacugaacauuguagccgacc  
c       c                           g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5985

Accession MIMAT0023497
Description Haemonchus contortus hco-miR-5985 mature miRNA
Sequence 10 - AAACACUGACUUGUAACAUCGGC - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4