Stem-loop hco-mir-5988

Accession

MI0020172

Description

Haemonchus contortus hco-mir-5988 precursor miRNA

Sequence

ucuguagcugagaagcuuaaaucucggcggucgcaguggaaccaucagugagugauccaagauggagcauUCCCUGAGAAUUCCAUCGACGACacaguaauac
.((((.(((((((........))))))).(((((.((((((...((((.(((((.((((...)))).))))).))))...)))))).).))))))))......

Structure

-----u    agcugagaagcuuaaaucucggcg    - a      cca    u     a    a 
      cugu                        gucg c guggaa   ucag gagug ucca  
      ||||                        |||| | ||||||   |||| ||||| |||| g
      gaca                        CAGC G UACCUU   AGUC CUuac aggu  
cauaau    ------------------------    A C      AAG    C     g    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5988

• Accession: MIMAT0023503
• Description: Haemonchus contortus hco-miR-5988 mature miRNA
• Sequence: 71 - UCCCUGAGAAUUCCAUCGACGAC - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4