miRBase entry: ath-MIR5996

Stem-loop ath-MIR5996


Accession
MI0020190
Description
Arabidopsis thaliana ath-MIR5996 precursor miRNA


Sequence

guacuaauuuuucgagcacaUGACAUCCAGAUAGAAGCUUUGuuaaacgucaucaaagucaagauuugguauaaacguuuaacaaacuucuauuuggaugucaugugcucgaagaguuagaacua
((.((((((((((((((((((((((((((((((((((.((((((((((((.((((((.......))))))....)))))))))))))))))))))))))))))))))))))))))))))).))..

Structure
--  a                                  C            ---c      gu 
  gu cuaauuuuucgagcacaUGACAUCCAGAUAGAAG UUUGuuaaacgu    aucaaa  c
  || |||||||||||||||||||||||||||||||||| ||||||||||||    ||||||  a
  ca gauugagaagcucguguacuguagguuuaucuuc aaacaauuugca    ugguuu  a
au  a                                  -            aaua      ag 


Annotation confidence Not enough data
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Genome context
chr4: 7882765-7882889 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ath-MIR5996
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR5996

Accession MIMAT0023519
Description Arabidopsis thaliana ath-miR5996 mature miRNA
Sequence 21 - UGACAUCCAGAUAGAAGCUUUG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22221297
    Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
    "Zhang B, Xie D, Jin Z"
    "J Integr Plant Biol (2012) 54:73-86