miRBase entry: ame-mir-6001

Stem-loop ame-mir-6001


Accession
MI0020211
Description
Apis mellifera ame-mir-6001 precursor miRNA

Literature search
1 open access papers mention ame-mir-6001
(33 sentences)

Sequence

agGUAGGUAACGACUGAUGGGAACacucugagauuuucuuuaaugUUCUCUUUGGUUGUUACCACUAg
.(((.((((((((((((.(((((((....((((...))))...))))))).)))))))))))))))..

Structure
-a   A            U       cucu    u 
  gGU GGUAACGACUGA GGGAACa    gaga  
  ||| |||||||||||| |||||||    |||| u
  UCA CCAUUGUUGGUU CUCUUgu    uucu  
gA   -            U       -aau    u 


Annotation confidence Not enough data
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Genome context
CM000064.5: 2707108-2707175 [-]

Database links

Mature ame-miR-6001-5p

Accession MIMAT0023541
Description Apis mellifera ame-miR-6001-5p mature miRNA
Sequence 3 - GUAGGUAACGACUGAUGGGAAC - 24
Evidence experimental
SOLiD [1]

Mature ame-miR-6001-3p

Accession MIMAT0023542
Description Apis mellifera ame-miR-6001-3p mature miRNA
Sequence 46 - UUCUCUUUGGUUGUUACCACUA - 67
Evidence experimental
SOLiD [1], Illumina [3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226