Stem-loop ame-mir-6002

Accession

MI0020212

Description

Apis mellifera ame-mir-6002 precursor miRNA

Sequence

ucgaaggauuuuugcugaUCGAAGCGAAGGGUAUUCCgaucguaauaacaauCGAGAGUAACGUUUCGUGGcaccacuuc
..((((......((((...(((((((.....(((((((((.((....)).)))).))))).))))))).))))...))))

Structure

uc    gauuuu    gaU       AAGGG     -    c  a 
  gaag      ugcu   CGAAGCG     UAUUC Cgau gu a
  ||||      ||||   |||||||     ||||| |||| ||  
  cuuc      acGG   GCUUUGC     AUGAG GCua ca u
--    ---acc    --U       ----A     A    a  a 

Annotation confidence Not enough data

Genome context

CM000069.5: 3088947-3089026 [+]

Mature ame-miR-6002-5p

• Accession: MIMAT0023543
• Description: Apis mellifera ame-miR-6002-5p mature miRNA
• Sequence: 19 - UCGAAGCGAAGGGUAUUCC - 37
• Evidence: experimental ; SOLiD [1]

Mature ame-miR-6002-3p

• Accession: MIMAT0023544
• Description: Apis mellifera ame-miR-6002-3p mature miRNA
• Sequence: 53 - CGAGAGUAACGUUUCGUGG - 71
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323