miRBase entry: tca-mir-6012

Stem-loop tca-mir-6012


Accession
MI0020223
Description
Tribolium castaneum tca-mir-6012 precursor miRNA
Gene family
MIPF0001496; mir-6012

Literature search
1 open access papers mention tca-mir-6012
(1 sentences)

Sequence

cgauugugacugggucacguagaggaaggaaagacaaucugguggugugcagggugaacagaCUGAUCUUGUUUCUGCGGAaauguuaguuacagucauUUCGGCGAUGAGAUCAGCCUGUCgaacccagcucgaguucguucaacacuuucuucucuaguaauaugcagcgc
.....(((.(((.((.((.((((((..((((((......(((...((.((.((((..((((.(((((((((((...((.((((((...........)))))).))))))))))))).))))...)))).)).))...))).......))))))))))))))...)).))))))

Structure
cgauu   a   g  --c  g      aa      -acaauc   ugg  u  a    -ga    a           UCU  G      uuag 
     gug cug gu   ac uagagg  ggaaag       ugg   ug gc gggu   acag CUGAUCUUGUU   GC GAaaug    u
     ||| ||| ||   || ||||||  ||||||       |||   || || ||||   |||| |||||||||||   || ||||||    u
     cgc gac ua   ug aucucu  ucuuuc       gcu   gc cg ccca   UGUC GACUAGAGUAG   CG CUUuac    a
-----   -   g  uaa  -      --      acaacuu   uga  u  a    agC    C           ---  G      ugac 


Annotation confidence Not enough data
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Genome context
ChLG3: 6961931-6962103 [-]

Database links

Mature tca-miR-6012-5p

Accession MIMAT0023565
Description Tribolium castaneum tca-miR-6012-5p mature miRNA
Sequence 63 - CUGAUCUUGUUUCUGCGGA - 81
Evidence experimental
SOLiD [1]

Mature tca-miR-6012-3p

Accession MIMAT0023566
Description Tribolium castaneum tca-miR-6012-3p mature miRNA
Sequence 100 - UUCGGCGAUGAGAUCAGCCUGUC - 122
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323