miRBase entry: tca-mir-9e

Stem-loop tca-mir-9e


Accession
MI0020231
Description
Tribolium castaneum tca-mir-9e precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention tca-mir-9e
(3 sentences)

Sequence

aacagguugcaagucggauauauucuUCUUUGGUGAUCUAGUUGUAUgaguguuuuauauaucAUAAAGCUGGUUCAGCAAAGCAgauugcauucgacucuucgacgagcc
.....((((..((((((((.((.(((.(((((.(((.((((((.(((((.(((.....)))))))).)))))).))).))))).))).)).))))))))...)))).....

Structure
aacag    -ca        a  u   U     G   U      G     g   u 
     guug   agucggau ua ucu CUUUG UGA CUAGUU UAUga ugu u
     ||||   |||||||| || ||| ||||| ||| |||||| ||||| ||| u
     cagc   ucagcuua gu agA GAAAC ACU GGUCGA AUAcu aua a
ccgag    uuc        c  u   C     G   U      A     -   u 


Annotation confidence Not enough data
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Genome context
ChLG9: 11062-11172 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-mir-9e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-9e-5p

Accession MIMAT0023581
Description Tribolium castaneum tca-miR-9e-5p mature miRNA
Sequence 27 - UCUUUGGUGAUCUAGUUGUAU - 47
Evidence experimental
SOLiD [1]

Mature tca-miR-9e-3p

Accession MIMAT0023582
Description Tribolium castaneum tca-miR-9e-3p mature miRNA
Sequence 64 - AUAAAGCUGGUUCAGCAAAGCA - 85
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323