miRBase entry: sly-MIR6023

Stem-loop sly-MIR6023


Accession
MI0020240
Description
Solanum lycopersicum sly-MIR6023 precursor miRNA
Gene family
MIPF0001603; MIR6023

Literature search
6 open access papers mention sly-MIR6023
(11 sentences)

Sequence

agcaguaaucucuguucauaUUCCAUGAAAGAGUUUUUGGAUaagaucuuuuaccguaguaaucacaaauccuagacgacugugcucuuggacagaaauuucugaucaaagcauuucccuucuuaaauucaagagaaugcuuacaguaggucccucaucgaguguuugugauuacuacggucaggaaucuuauccagagacaauucauggaauaugagcugagauuggugucua
.(((.(((((((.((((((((((((((((...((((((((((((((((((..((((((((((((((((((.((.(((.((((((...((((.((((....)))).))))(((((((....((((......)))))))))))))))))..)))........)).)))))))))))))))))).))).)))))))))))))))..)))))))))))))))).))))))).)))...

Structure
--a   g       u                AGA               -   uu                  c  -------a   -g      cucuuggacagaaauuucugaucaa       cccu    aa 
   gca uaaucuc guucauaUUCCAUGAA   GUUUUUGGAUaagau cuu  accguaguaaucacaaau cu        gac  acugug                         agcauuu    ucuu  a
   ||| ||||||| ||||||||||||||||   ||||||||||||||| |||  |||||||||||||||||| ||        |||  ||||||                         |||||||    ||||   
   ugu guuagag cgaguauaagguacuu   cagagaccuauucua gga  uggcaucauuaguguuug ga        cug  ugacau                         ucguaag    agaa  u
auc   g       u                -aa               a   -c                  u  gcuacucc   ga      -------------------------       ----    cu 


Annotation confidence Not enough data
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Genome context
chr12: 66469562-66469795 [-]

Database links

Mature sly-miR6023

Accession MIMAT0023592
Description Solanum lycopersicum sly-miR6023 mature miRNA
Sequence 21 - UUCCAUGAAAGAGUUUUUGGAU - 42
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795