miRBase entry: stu-MIR482d

Stem-loop stu-MIR482d


Accession
MI0020248
Description
Solanum tuberosum stu-MIR482d precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
9 open access papers mention stu-MIR482d
(41 sentences)

Sequence

aauuuuugggaagcuuuuggCGUGAGUGGUGGGGUAAGAUAgaucuaucauauuuaugauaugaaaaaUCUUGCCUACACCGCCCAUGCCcauaucuuccaauuauuucu
........(((((.....((((((.(((((((((((((((...((((((((....)))))).))...))))))))).)))))).)))))).....)))))..........

Structure
--aauuuuug     cuuuu      A      -         Aga  -      a 
          ggaag     ggCGUG GUGGUG GGGUAAGAU   uc uaucau u
          |||||     |||||| |||||| |||||||||   || ||||||  
          ccuuc     CCGUAC CGCCAC UCCGUUCUa   ag auagua u
ucuuuauuaa     uauac      C      A         aaa  u      u 


Annotation confidence Not enough data
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Genome context
JH138014.1: 531315-531424 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from stu-MIR482d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR482d-3p

Accession MIMAT0023600
Description Solanum tuberosum stu-miR482d-3p mature miRNA
Sequence 69 - UCUUGCCUACACCGCCCAUGCC - 90
Evidence experimental
Illumina [2]

Mature stu-miR482d-5p

Accession MIMAT0031162
Description Solanum tuberosum stu-miR482d-5p mature miRNA
Sequence 21 - CGUGAGUGGUGGGGUAAGAUA - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233