miRBase entry: nta-MIR482b

Stem-loop nta-MIR482b


Accession
MI0020252
Description
Nicotiana tabacum nta-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
1 open access papers mention nta-MIR482b
(3 sentences)

Sequence

guguuuaagggagcuuuuggAGUGGGUGGAGUGGUAAGAUAucauauuuauguugaaucauaauaauugaaaUCUUGCCAAUGCCAUCCAUUCCuauggcuuccaaucauuucu
........(((((((...((((((((((((.(((((((((.(((...(((((......)))))....))).))))))))).).)))))))))))...)))))))..........

Structure
--guguuuaa       uuu           - G         A   -uau     uu 
          gggagcu   ggAGUGGGUGG A UGGUAAGAU uca    uuaug  g
          |||||||   ||||||||||| | ||||||||| |||    |||||   
          ccuucgg   CCUUACCUACC U ACCGUUCUa agu    aauac  a
ucuuuacuaa       uau           G A         a   uaau     ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR482b-5p

Accession MIMAT0023604
Description Nicotiana tabacum nta-miR482b-5p mature miRNA
Sequence 21 - AGUGGGUGGAGUGGUAAGAUA - 41
Evidence experimental
Illumina [2]

Mature nta-miR482b-3p

Accession MIMAT0023605
Description Nicotiana tabacum nta-miR482b-3p mature miRNA
Sequence 73 - UCUUGCCAAUGCCAUCCAUUCC - 94
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28