miRBase entry: stu-MIR6025

Stem-loop stu-MIR6025


Accession
MI0020255
Description
Solanum tuberosum stu-MIR6025 precursor miRNA
Gene family
MIPF0001375; MIR6025

Literature search
2 open access papers mention stu-MIR6025
(7 sentences)

Sequence

uucuuugccuaauucugguaUACCAACAAUUGAGAUAACAUCuagguuugaugaucuuuugauuagcuaauuguauaguuaucaccuguacacuugcacaaaauuauuauugaaccuugauguuaucucaguguuggcaugcauaaauuggguaaauuuau
...(((((((((((...((((.((((((.(((((((((((((.((((((((((((.(((((....((.((.(((((((.......))))))).)))).)))))..)))))))))))).))))))))))))))))))).))))...))))))))))).....

Structure
--uuc           cug    A      A             u            -c     auua  u  u       uu 
     uuugccuaauu   guaU CCAACA UUGAGAUAACAUC agguuugaugau  uuuug    gc aa uguauag  a
     |||||||||||   |||| |||||| ||||||||||||| ||||||||||||  |||||    || || |||||||  u
     aaauggguuaa   cgua gguugu gacucuauuguag uccaaguuauua  aaaac    cg uu acauguc  c
uauuu           aua    c      -             u            uu     ---a  -  c       ca 


Annotation confidence Not enough data
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Genome context
JH137842.1: 2036023-2036183 [-]

Database links

Mature stu-miR6025

Accession MIMAT0023608
Description Solanum tuberosum stu-miR6025 mature miRNA
Sequence 21 - UACCAACAAUUGAGAUAACAUC - 42
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795