miRBase entry: ame-mir-6040

Stem-loop ame-mir-6040


Accession
MI0020307
Description
Apis mellifera ame-mir-6040 precursor miRNA


Sequence

ggcauauucgagaccucaguccagccuuguacuguguugcguaacuccaUAGUACGGGCAGUACUGGGAaaucgugugu
.(((((..(((...((((((.(.((((.((((((((..(.....)..)))))))))))).).))))))...))))))))

Structure
g     uu   gac      c a    u        uu c 
 gcaua  cga   cucagu c gccu guacugug  g g
 |||||  |||   |||||| | |||| ||||||||  | u
 ugugu  gcu   GGGUCA G CGGG CAUGAUac  c a
-     --   aaA      U A    -        cu a 


Annotation confidence Not enough data
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Genome context
CM000057.5: 11872753-11872831 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-mir-6040
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-6040-3p

Accession MIMAT0023660
Description Apis mellifera ame-miR-6040-3p mature miRNA
Sequence 50 - UAGUACGGGCAGUACUGGGA - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670