miRBase entry: ame-mir-6042

Stem-loop ame-mir-6042


Accession
MI0020311
Description
Apis mellifera ame-mir-6042 precursor miRNA


Sequence

uccuucgacgauaccuaccacuguacuaucgucgccugcuugcaacggUAGGAACGGUAGUAGUGGAGAauugcugugg
.((..((.((((..((.(((((..((((((((..((((((......)))))).))))))))))))))).)))).)).))

Structure
u  uu  a    ac  a     gu        cg      ug 
 cc  cg cgau  cu ccacu  acuaucgu  ccugcu  c
 ||  || ||||  || |||||  ||||||||  ||||||   
 gg  gu guua  GA GGUGA  UGAUGGCA  GGAUgg  a
-  -u  c    -A  -     --        -A      ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000059.5: 11037290-11037368 [-]

Database links

Mature ame-miR-6042-3p

Accession MIMAT0023664
Description Apis mellifera ame-miR-6042-3p mature miRNA
Sequence 49 - UAGGAACGGUAGUAGUGGAGA - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  2. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226