miRBase entry: cgr-let-7f

Stem-loop cgr-let-7f


Accession
MI0020372
Description
Cricetulus griseus cgr-let-7f precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

4043972 reads, 56184 reads per million, 6 experiments
ucuaucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuucccugaggaguagac
(((.((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))))))......

Structure
------   a    a U                       ---------       u 
      ucu ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
      ||| |||| | |||||||||||||||||||||||         ||||||| a
      agg aguc c uuccguuaucuaacauaucaaua         ucccauu u
cagaug   -    - c                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
JH000030.1: 3830872-3830971 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-let-7f

Accession MIMAT0023721
Description Cricetulus griseus cgr-let-7f mature miRNA
Sequence 11 - UGAGGUAGUAGAUUGUAUAGUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75