miRBase entry: cgr-mir-10a

Stem-loop cgr-mir-10a


Accession
MI0020381
Description
Cricetulus griseus cgr-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention cgr-mir-10a
(3 sentences)

Sequence

2789108 reads, 38558 reads per million, 6 experiments
uucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUauguaguuga
..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))....

Structure
--uu        A    G     C          uaaggaa 
    cuguauaU CCCU UAGAU CGAAUUUGUg       u
    |||||||| |||| ||||| ||||||||||        
    gauguaUA GGGG AUCUA GCUUAAACac       u
aguu        A    -     U          ugguguu 


Annotation confidence High
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Genome context
JH000166.1: 154110-154190 [+]

Database links

Mature cgr-miR-10a-5p

Accession MIMAT0023735
Description Cricetulus griseus cgr-miR-10a-5p mature miRNA
Sequence 10 - UACCCUGUAGAUCCGAAUUUGU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-10a-3p

Accession MIMAT0023736
Description Cricetulus griseus cgr-miR-10a-3p mature miRNA
Sequence 51 - CAAAUUCGUAUCUAGGGGAAU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75