miRBase entry: cgr-mir-130b

Stem-loop cgr-mir-130b


Accession
MI0020395
Description
Cricetulus griseus cgr-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

8074 reads, 104 reads per million, 6 experiments
cuugcuggacACUCUUUCCCUGUUGCACUACUgugggccacuggggagCAGUGCAAUGAUGAAAGGGCAUcugucaggc
...(((.(((((((((((..(((((((((.((.(((....))).))...)))))))))..)))))))....)))).)))

Structure
cuu   g    ----       CC         --A  g   g 
   gcu gacA    CUCUUUC  UGUUGCACU   CU ugg c
   ||| ||||    |||||||  |||||||||   || |||  
   cgg cugu    GGGAAAG  GUAACGUGA   gg guc c
---   a    cUAC       UA         Cga  g   a 


Annotation confidence Not enough data
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Genome context
JH000340.1: 1046830-1046908 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-130b-5p

Accession MIMAT0023756
Description Cricetulus griseus cgr-miR-130b-5p mature miRNA
Sequence 11 - ACUCUUUCCCUGUUGCACUACU - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-130b-3p

Accession MIMAT0023757
Description Cricetulus griseus cgr-miR-130b-3p mature miRNA
Sequence 49 - CAGUGCAAUGAUGAAAGGGCAU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75