miRBase entry: cgr-mir-134

Stem-loop cgr-mir-134


Accession
MI0020397
Description
Cricetulus griseus cgr-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134


Sequence

7191 reads, 81 reads per million, 6 experiments
uucagggugUGUGACUGGUUGACCAGAGGGGcaugcacucuguuuacccugugggccaccuagucaccaacccucagcau
...(((((..((((((((.((.(((.((((....(((...)))...)))).)))..)).))))))))..)))))......

Structure
---uuc     gU        U  -A   G    Gcau   c 
      agggu  GUGACUGG UG  CCA AGGG    gca  
      |||||  |||||||| ||  ||| ||||    ||| u
      uccca  cacugauc ac  ggu uccc    ugu  
uacgac     ac        c  cg   g    -auu   c 


Annotation confidence Not enough data
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Genome context
JH000884.1: 63116-63195 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from cgr-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-134

Accession MIMAT0023760
Description Cricetulus griseus cgr-miR-134 mature miRNA
Sequence 10 - UGUGACUGGUUGACCAGAGGGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75