miRBase entry: cgr-mir-138

Stem-loop cgr-mir-138


Accession
MI0020400
Description
Cricetulus griseus cgr-mir-138 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

4414 reads, 50 reads per million, 6 experiments
gguugcugcAGCUGGUGUUGUGAAUCAGGCcgacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugc
....((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))

Structure
gguu  u  AG             UCA     -ac   c  cg 
    gc gc  CUGGUGUUGUGAA   GGCcg   gag ag  c
    || ||  |||||||||||||   |||||   ||| ||   
    cg ug  gaccacagcacuu   ucggc   uuc uc  a
----  u  -g             -ua     cca   -  cu 


Annotation confidence Low
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Genome context
JH000405.1: 970785-970864 [+]

Database links

Mature cgr-miR-138

Accession MIMAT0023764
Description Cricetulus griseus cgr-miR-138 mature miRNA
Sequence 10 - AGCUGGUGUUGUGAAUCAGGC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75