miRBase entry: cgr-mir-142

Stem-loop cgr-mir-142


Accession
MI0020404
Description
Cricetulus griseus cgr-mir-142 precursor miRNA
Gene family
MIPF0000084; mir-142


Sequence

4562 reads, 52 reads per million, 6 experiments
agugcagucaCCCAUAAAGUAGAAAGCACUACuaacagcacuggaggguGUAGUGUUUCCUACUUUAUGGaugagugua
..((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))

Structure
ag    g   C           A         uaa ag a 
  ugca uca CCAUAAAGUAG AAGCACUAC   c  c c
  |||| ||| ||||||||||| |||||||||   |  |  
  augu agu GGUAUUUCAUC UUUGUGAUG   g  g u
--    g   a           C         -ug ga g 


Annotation confidence Low
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Genome context
JH000425.1: 187817-187895 [-]

Database links

Mature cgr-miR-142-5p

Accession MIMAT0023770
Description Cricetulus griseus cgr-miR-142-5p mature miRNA
Sequence 11 - CCCAUAAAGUAGAAAGCACUAC - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-142-3p

Accession MIMAT0023771
Description Cricetulus griseus cgr-miR-142-3p mature miRNA
Sequence 50 - GUAGUGUUUCCUACUUUAUGG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75