miRBase entry: cgr-mir-143

Stem-loop cgr-mir-143


Accession
MI0020405
Description
Cricetulus griseus cgr-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
1 open access papers mention cgr-mir-143
(4 sentences)

Sequence

7218 reads, 106 reads per million, 6 experiments
cugucucccagccugaggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUCaggaaggga
.....((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..))))

Structure
cuguc    ag      g         g      u  -  ag 
     uccc  ccugag ugcagugcu caucuc gg uc  u
     ||||  |||||| ||||||||| |||||| || ||   
     aggg  ggaCUC AUGUCACGA GUAGAG cu ag  u
-----    aa      G         A      U  g  gg 


Annotation confidence Not enough data
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Genome context
JH000986.1: 202913-202992 [-]

Database links

Mature cgr-miR-143

Accession MIMAT0023772
Description Cricetulus griseus cgr-miR-143 mature miRNA
Sequence 51 - UGAGAUGAAGCACUGUAGCUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75