miRBase entry: cgr-mir-149

Stem-loop cgr-mir-149


Accession
MI0020411
Description
Cricetulus griseus cgr-mir-149 precursor miRNA
Gene family
MIPF0000274; mir-149


Sequence

32891 reads, 466 reads per million, 6 experiments
ugcccgggcUCUGGCUCCGUGUCUUCACUCCcguguuuguccgaggaggGAGGGAGGGACGGGGGCGGUGCuggggcaacu
(((((.(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).))).)))))...

Structure
---     g   U   G      G     A     g g  u 
   ugccc ggc CUG CUCCGU UCUUC CUCCc u uu g
   ||||| ||| ||| |||||| ||||| ||||| | || u
   acggg uCG GGC GGGGCA GGAGG GAGgg g ag c
uca     g   U   G      G     -     a g  c 


Annotation confidence Low
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Genome context
JH000147.1: 456759-456839 [+]

Database links

Mature cgr-miR-149-5p

Accession MIMAT0023780
Description Cricetulus griseus cgr-miR-149-5p mature miRNA
Sequence 10 - UCUGGCUCCGUGUCUUCACUCC - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-149-3p

Accession MIMAT0023781
Description Cricetulus griseus cgr-miR-149-3p mature miRNA
Sequence 50 - GAGGGAGGGACGGGGGCGGUGC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75