miRBase entry: cgr-mir-17

Stem-loop cgr-mir-17


Accession
MI0020419
Description
Cricetulus griseus cgr-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
3 open access papers mention cgr-mir-17
(37 sentences)

Sequence

279378 reads, 3908 reads per million, 6 experiments
aggauaauguCAAAGUGCUUACAGUGCAGGUAGugauaugcacaucuACUGCAGUGCAGGCACUUGUGGcauuauggu
...(((((((((((((((((.((.(((((.(((((.......)).)))))))).)).)))))))).)))))))))...

Structure
agg         -        A  G     G   -  au 
   auaauguCA AAGUGCUU CA UGCAG UAG ug  a
   ||||||||| |||||||| || ||||| ||| ||  u
   uauuacGGU UUCACGGA GU ACGUC Auc ac  g
ugg         G        C  G     -   u  ac 


Annotation confidence High
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Genome context
JH001979.1: 109700-109777 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cgr-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-17-5p

Accession MIMAT0023795
Description Cricetulus griseus cgr-miR-17-5p mature miRNA
Sequence 11 - CAAAGUGCUUACAGUGCAGGUAG - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-17-3p

Accession MIMAT0023796
Description Cricetulus griseus cgr-miR-17-3p mature miRNA
Sequence 48 - ACUGCAGUGCAGGCACUUGUGG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75