miRBase entry: cgr-mir-196b

Stem-loop cgr-mir-196b


Accession
MI0020445
Description
Cricetulus griseus cgr-mir-196b precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

57964 reads, 727 reads per million, 6 experiments
gucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucucgacagcacgacacugccuucauuacuucaguug
...((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))).......

Structure
----guc      uU       U  C           ucca 
       ggugau  AGGUAGU UC UGUUGUUGGGa    c
       ||||||  ||||||| || |||||||||||     
       ucauua  uccguca ag acgacagcucu    c
guugacu      cu       c  c           cuuu 


Annotation confidence Low
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Genome context
JH000291.1: 82690-82769 [-]

Database links

Mature cgr-miR-196b

Accession MIMAT0023833
Description Cricetulus griseus cgr-miR-196b mature miRNA
Sequence 11 - UAGGUAGUUUCCUGUUGUUGGG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75