miRBase entry: cgr-mir-212

Stem-loop cgr-mir-212


Accession
MI0020459
Description
Cricetulus griseus cgr-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132


Sequence

5413 reads, 33 reads per million, 6 experiments
cgcgccggcACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucaguaacagucuccagucac
.((....))....(((((..((((((.((((((...(((...))).))))))))))))..))))).

Structure
cgcgccggcACCU     CU      C      ccc   c 
             UGGCU  AGACUG UUACUg   ggg  
             |||||  |||||| ||||||   ||| c
             acuga  ucugac aaugac   ccc  
------------c     cc      -      --u   g 


Annotation confidence Low
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Genome context
JH000768.1: 800029-800094 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-212

Accession MIMAT0023850
Description Cricetulus griseus cgr-miR-212 mature miRNA
Sequence 10 - ACCUUGGCUCUAGACUGCUUACU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75