miRBase entry: cgr-mir-22

Stem-loop cgr-mir-22


Accession
MI0020463
Description
Cricetulus griseus cgr-mir-22 precursor miRNA
Gene family
MIPF0000053; mir-22

Literature search
1 open access papers mention cgr-mir-22
(1 sentences)

Sequence

203227 reads, 2824 reads per million, 6 experiments
gagccgcaguAGUUCUUCAGUGGCAAGCUUUauguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUugcccucug
(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).)))..

Structure
--   cc               -     A      u  ccu 
  gag  gcaguAGUUCUUCAG UGGCA GCUUUa gu   g
  |||  ||||||||||||||| ||||| |||||| ||   a
  cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
gu   -c               G     -      -  acc 


Annotation confidence Not enough data
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Genome context
JH003801.1: 17001-17079 [-]

Database links

Mature cgr-miR-22-5p

Accession MIMAT0023856
Description Cricetulus griseus cgr-miR-22-5p mature miRNA
Sequence 11 - AGUUCUUCAGUGGCAAGCUUU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-22-3p

Accession MIMAT0023857
Description Cricetulus griseus cgr-miR-22-3p mature miRNA
Sequence 49 - AAGCUGCCAGUUGAAGAACUGU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75