miRBase entry: cgr-mir-221

Stem-loop cgr-mir-221


Accession
MI0020464
Description
Cricetulus griseus cgr-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
2 open access papers mention cgr-mir-221
(7 sentences)

Sequence

123512 reads, 1711 reads per million, 6 experiments
ggggcaugaACCUGGCAUACAAUGUAGAUUUCUGUguuuauuaggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccug
(((((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))).))..

Structure
--  -   a    -       U         AUUU    -    a 
  gg ggc ugaA CCUGGCA ACAAUGUAG    CUGU guuu  
  || ||| |||| ||||||| |||||||||    |||| |||| u
  cc ucg aCUU GGGUCGU UGUUACAUC    GAca cgga  
gu  a   g    U       C         ----    a    u 


Annotation confidence High
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Genome context
JH000515.1: 1085312-1085393 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-221-5p

Accession MIMAT0023858
Description Cricetulus griseus cgr-miR-221-5p mature miRNA
Sequence 10 - ACCUGGCAUACAAUGUAGAUUUCUGU - 35
Evidence experimental
Illumina [1]

Mature cgr-miR-221-3p

Accession MIMAT0023859
Description Cricetulus griseus cgr-miR-221-3p mature miRNA
Sequence 50 - AGCUACAUUGUCUGCUGGGUUUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75