miRBase entry: cgr-mir-23a

Stem-loop cgr-mir-23a


Accession
MI0020466
Description
Cricetulus griseus cgr-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
1 open access papers mention cgr-mir-23a
(4 sentences)

Sequence

77451 reads, 1072 reads per million, 6 experiments
uuggccggcuGGGGUUCCUGGGGAUGGGAUUUgaugccagucacaaAUCACAUUGCCAGGGAUUUCCaacugaccu
..((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).

Structure
uu  c   c     -       G    G      a  c 
  gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
  || ||| ||||| ||||||| |||| |||||| || a
  cc guc aCCUU AGGGACC UUAC CUAaac ac g
-u  a   a     U       G    A      -  u 


Annotation confidence Low
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Genome context
JH000286.1: 1079003-1079078 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cgr-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-23a-5p

Accession MIMAT0023862
Description Cricetulus griseus cgr-miR-23a-5p mature miRNA
Sequence 11 - GGGGUUCCUGGGGAUGGGAUUU - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-23a-3p

Accession MIMAT0023863
Description Cricetulus griseus cgr-miR-23a-3p mature miRNA
Sequence 47 - AUCACAUUGCCAGGGAUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75