miRBase entry: cgr-mir-30a

Stem-loop cgr-mir-30a


Accession
MI0020484
Description
Cricetulus griseus cgr-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention cgr-mir-30a
(4 sentences)

Sequence

6715 reads, 66 reads per million, 6 experiments
agugagcgacUGUAAACAUCCUCGACUGGAAGCugugaagccacaaaugggCUUUCAGUCGGAUGUUUGCAGCugccuacug
((((.(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).))).)))).

Structure
-    a   a            UC           -----   a 
 agug gcg cUGUAAACAUCC  GACUGGAAGCu     gug a
 |||| ||| ||||||||||||  |||||||||||     |||  
 ucau cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
g    c   C            --           guaaa   c 


Annotation confidence Low
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Genome context
JH000029.1: 3496113-3496194 [-]

Database links

Mature cgr-miR-30a-5p

Accession MIMAT0023894
Description Cricetulus griseus cgr-miR-30a-5p mature miRNA
Sequence 11 - UGUAAACAUCCUCGACUGGAAGC - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-30a-3p

Accession MIMAT0023895
Description Cricetulus griseus cgr-miR-30a-3p mature miRNA
Sequence 52 - CUUUCAGUCGGAUGUUUGCAGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75