miRBase entry: cgr-mir-328

Stem-loop cgr-mir-328


Accession
MI0020496
Description
Cricetulus griseus cgr-mir-328 precursor miRNA
Gene family
MIPF0000203; mir-328


Sequence

8557 reads, 83 reads per million, 6 experiments
ccuggagcgggggggcaggaggggcucagggagaaagugucuacagcccCUGGCCCUCUCUGCCCUUCCGUccccugacu
...((.(((((((((((((.(((((.((((((((.....))).....)))))))))).))))))))))))).))......

Structure
---ccu  a             a     u     -----   a 
      gg gcgggggggcagg ggggc caggg     aga a
      || ||||||||||||| ||||| |||||     ||| g
      cc UGCCUUCCCGUCU UCCCG GUCcc     ucu u
ucaguc  c             C     -     cgaca   g 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
JH000973.1: 241883-241962 [-]

Database links

Mature cgr-miR-328

Accession MIMAT0023914
Description Cricetulus griseus cgr-miR-328 mature miRNA
Sequence 50 - CUGGCCCUCUCUGCCCUUCCGU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75