miRBase entry: cgr-mir-34a

Stem-loop cgr-mir-34a


Accession
MI0020505
Description
Cricetulus griseus cgr-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
3 open access papers mention cgr-mir-34a
(6 sentences)

Sequence

3858 reads, 54 reads per million, 6 experiments
agugcuucuuUGGCAGUGUCUUAGCUGGUUGUugugaguaauagcgaaggaagcaaucagcaaguauacugcccuagaagugcug
(((((((((..(((((((((((.((((((((((....((....))......))))))))))))).))))))))..))))))))).

Structure
-         uU        -   A          --guga  a 
 agugcuucu  GGCAGUGU CUU GCUGGUUGUu      gu a
 |||||||||  |||||||| ||| ||||||||||      ||  
 ucgugaaga  ccgucaua gaa cgacuaacga      cg u
g         uc        u   -          aggaag  a 


Annotation confidence Low
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Genome context
JH007589.1: 3416-3500 [-]

Database links

Mature cgr-miR-34a

Accession MIMAT0023926
Description Cricetulus griseus cgr-miR-34a mature miRNA
Sequence 11 - UGGCAGUGUCUUAGCUGGUUGU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75