miRBase entry: cgr-mir-34c

Stem-loop cgr-mir-34c


Accession
MI0020507
Description
Cricetulus griseus cgr-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
2 open access papers mention cgr-mir-34c
(4 sentences)

Sequence

3818972 reads, 53089 reads per million, 6 experiments
cuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACGGCCAGGuaaaaagacu
((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..))...

Structure
---  ag     A   A    A     C      C  a 
   cu  uuacu GGC GUGU GUUAG UGAUUG ua u
   ||  ||||| ||| |||| ||||| |||||| ||  
   ga  aauGG CCG CACA CAAUC ACUAAc au a
uca  aa     A   G    C     -      c  g 


Annotation confidence High
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Genome context
JH000115.1: 808827-808900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-34c-5p

Accession MIMAT0023929
Description Cricetulus griseus cgr-miR-34c-5p mature miRNA
Sequence 10 - AGGCAGUGUAGUUAGCUGAUUGC - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-34c-3p

Accession MIMAT0023930
Description Cricetulus griseus cgr-miR-34c-3p mature miRNA
Sequence 43 - AAUCACUAACCACACGGCCAGG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75