miRBase entry: cgr-mir-500

Stem-loop cgr-mir-500


Accession
MI0020534
Description
Cricetulus griseus cgr-mir-500 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

6790 reads, 74 reads per million, 6 experiments
cucccccucucuaauccuugcuaucuaggugcuagugcuaucucaaugcAAUGCACCUGGGCAAGGGUUCagagaaggug
....((.((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))).))..

Structure
cucc  c     -         uau        uag   uau 
    cc ucucu aauccuugc   cuaggugc   ugc   c
    || ||||| |||||||||   ||||||||   |||   u
    gg agaga UUGGGAACG   GGUCCACG   Acg   c
--gu  a     C         ---        -UA   uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cgr-miR-500

Accession MIMAT0023974
Description Cricetulus griseus cgr-miR-500 mature miRNA
Sequence 50 - AAUGCACCUGGGCAAGGGUUC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75