miRBase entry: cgr-mir-653

Stem-loop cgr-mir-653


Accession
MI0020547
Description
Cricetulus griseus cgr-mir-653 precursor miRNA
Gene family
MIPF0000435; mir-653


Sequence

2125 reads, 30 reads per million, 6 experiments
auucuuucaguguugaaacaaucucuauugagccaagcuccaaagcaagUUCACUGGAGUUUGUUUCAAUAuugcaagaa
.(((((.((((((((((((((.(((((.(((((...(((....)))..))))).))))).)))))))))))))).)))))

Structure
a     u              u     u     caa   c 
 uucuu caguguugaaacaa cucua ugagc   gcu c
 ||||| |||||||||||||| ||||| |||||   |||  
 aagaa guuAUAACUUUGUU GAGGU ACUUg   cga a
-     c              U     C     -aa   a 


Annotation confidence Low
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Genome context
JH000059.1: 2589071-2589150 [-]

Database links

Mature cgr-miR-653

Accession MIMAT0023993
Description Cricetulus griseus cgr-miR-653 mature miRNA
Sequence 50 - UUCACUGGAGUUUGUUUCAAUA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75