miRBase entry: ptr-mir-548o

Stem-loop ptr-mir-548o


Accession
MI0020601
Description
Pan troglodytes ptr-mir-548o precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548o
(2 sentences)

Sequence

uaucguuucuauguaaauauuuagauuggugcAAAAGUAAUUGCGGUUUUUGCCauuaaaaguaaugcggccaaaacugcaguuacuuuugcacccaccuaauacaucaaa
..........(((((.....((((...(((((((((((((((((((((((.(((((((....))))..))).)))))))))))))))))))))))...)))))))))....

Structure
uaucguuucu     aauau    auu                       U   --    a 
          augua     uuag   ggugcAAAAGUAAUUGCGGUUUU GCC  auua a
          |||||     ||||   ||||||||||||||||||||||| |||  ||||  
          uacau     aauc   ccacguuuucauugacgucaaaa cgg  uaau a
------aaac     -----    cac                       c   cg    g 


Annotation confidence Not enough data
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Genome context
chr20: 40058768-40058878 [+]

Database links

Mature ptr-miR-548o

Accession MIMAT0024054
Description Pan troglodytes ptr-miR-548o mature miRNA
Sequence 33 - AAAAGUAAUUGCGGUUUUUGCC - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116