miRBase entry: ggo-mir-548b

Stem-loop ggo-mir-548b


Accession
MI0020808
Description
Gorilla gorilla ggo-mir-548b precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ggo-mir-548b
(2 sentences)

Sequence

uauuccauuucagacuauauauuuagguuggcgcaaaaguaauugcgguuuuggccuuuauuuucaauggCAAAAACCUCAGUUGCUUUUGugccaaccuaauacuucaca
......................(((((((((((((((((((((((.((((((.(((............))).)))))).))))))))))))))))))))))).........

Structure
uauuccauuucagacuauauau                       c      g   uuuau 
                      uuagguuggcgcaaaaguaauug gguuuu gcc     u
                      ||||||||||||||||||||||| |||||| |||      
                      aauccaaccguGUUUUCGUUGAC CCAAAA Cgg     u
-------------acacuucau                       U      A   uaacu 


Annotation confidence Not enough data
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Genome context
chr6: 121339772-121339882 [-]

Database links

Mature ggo-miR-548b

Accession MIMAT0024260
Description Gorilla gorilla ggo-miR-548b mature miRNA
Sequence 71 - CAAAAACCUCAGUUGCUUUUG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116