Stem-loop ggo-mir-548c

Accession

MI0020814

Description

Gorilla gorilla ggo-mir-548c precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ggo-mir-548c
(2 sentences)

Sequence

uauugcuauuagguuggugcAAAAGUACUUGCGGAUUUUGcuuuacuuuuaauggcaaaaaccgcaauuauuuuugcuucaaccuaauaugaugcaaaguuggcuacaacu
..(((((((((((((((.(((((((((.((((((.(((((((...........))))))).)))))).))))))))).)))))))))))....))))(((((....)))))

Structure

------------ua    ----           u         C      A       uuac 
              uugc    uauuagguugg gcAAAAGUA UUGCGG UUUUGcu    u
              ||||    ||||||||||| ||||||||| |||||| |||||||    u
              aacg    auaauccaacu cguuuuuau aacgcc aaaacgg    u
ucaacaucgguuga    uagu           u         u      a       uaau 

Annotation confidence Not enough data

Genome context

chr11: 69602673-69602783 [+]

Mature ggo-miR-548c

• Accession: MIMAT0024266
• Description: Gorilla gorilla ggo-miR-548c mature miRNA
• Sequence: 21 - AAAAGUACUUGCGGAUUUUG - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116