Stem-loop ggo-mir-548a

Accession

MI0020826

Description

Gorilla gorilla ggo-mir-548a precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ggo-mir-548a
(2 sentences)

Sequence

auuuaugcacugcagggagguauuaaguugguucAAAAGUAAUUGUGGUUUUUGCcauuaaaaguaacgacaaaacuggcaauuacuuuugcaccaaacuugauauuuuug
.....(((...))).(((((((((((((((((.(((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))).))).)))))))))))))).

Structure

auuuaugcacugcag              -   u             G U     C a   a 
               ggagguauuaaguu ggu cAAAAGUAAUUGU G UUUUG c uua a
               |||||||||||||| ||| ||||||||||||| | ||||| | |||  
               uuuuuauaguucaa cca guuuucauuaacg u aaaac g aau a
--------------g              a   c             g c     a c   g 

Annotation confidence Not enough data

Genome context

chr6: 19101466-19101576 [+]

Mature ggo-miR-548a

• Accession: MIMAT0024278
• Description: Gorilla gorilla ggo-miR-548a mature miRNA
• Sequence: 35 - AAAAGUAAUUGUGGUUUUUGC - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116