miRBase entry: ggo-mir-200b

Stem-loop ggo-mir-200b


Accession
MI0020847
Description
Gorilla gorilla ggo-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
1 open access papers mention ggo-mir-200b
(1 sentences)

Sequence

cggcccccggacccagcucgggcagccguggccaucuuacugggcagcauuggauggagucaggucucUAAUACUGCCUGGUAAUGAUGACggcggagcccugcacgcagc
.((((...)).))..((..((((..((((.(.(((((((((((((((.((((((..((......)))))))).))))))))))).)))).).)))).)))).)).......

Structure
cggcccccggaccca  uc    ag    g c    -           c      ug  gu 
               gc  gggc  ccgu g cauc uuacugggcag auugga  ga  c
               ||  ||||  |||| | |||| ||||||||||| ||||||  ||   
               cg  cccg  ggcg C GUAG AAUGGUCCGUC UAAUcu  cu  a
--------cgacgca  -u    -a    g A    U           A      --  gg 


Annotation confidence Not enough data
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Genome context
chr1: 808769-808879 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ggo-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-200b

Accession MIMAT0024299
Description Gorilla gorilla ggo-miR-200b mature miRNA
Sequence 69 - UAAUACUGCCUGGUAAUGAUGAC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116