miRBase entry: mml-mir-3200

Stem-loop mml-mir-3200


Accession
MI0020871
Description
Macaca mulatta mml-mir-3200 precursor miRNA
Gene family
MIPF0001441; mir-3200


Sequence

977 reads, 11 reads per million, 8 experiments
agagagacaaagaaggagguggucgaggGAAUCUGAGAAGGCGCACAAGGUUUGUGuccaauacaguccaCACCUUGCGCUACUCAGGUCUGcucgugcccucccaugau
..............(((((.(..((((.(.(((((((..((((((..((((((((((...)))))).....)))))))))).))))))).).))))..))))))......

Structure
agagagacaaagaa     u gu    g A       AA      CA    -----      c 
              ggagg g  cgag G AUCUGAG  GGCGCA  AGGU     UUGUGu  
              ||||| |  |||| | |||||||  ||||||  ||||     |||||| c
              ccucc c  gcuc U UGGACUC  UCGCGU  UCCA     gacaua  
--------uaguac     - gu    G C       -A      --    Caccu      a 


Annotation confidence High
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Genome context
chr10: 72589387-72589496 [+]

Database links

Mature mml-miR-3200-3p

Accession MIMAT0024323
Description Macaca mulatta mml-miR-3200-3p mature miRNA
Sequence 71 - CACCUUGCGCUACUCAGGUCUG - 92
Evidence experimental
Illumina [1-2]

Mature mml-miR-3200-5p

Accession MIMAT0027112
Description Macaca mulatta mml-miR-3200-5p mature miRNA
Sequence 29 - GAAUCUGAGAAGGCGCACAAGGUUUGUG - 56
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45