miRBase entry: ppy-mir-548h

Stem-loop ppy-mir-548h


Accession
MI0020925
Description
Pongo pygmaeus ppy-mir-548h precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ppy-mir-548h
(2 sentences)

Sequence

guuugucauuagaaaauaauauuagguuggagcAAAAGUAAUUGCGGUUUUUGuauugcuuucaaugauaaaagccagaauuacuuuugcaccaacuuaauaugauaaauuu
((((((((...........(((((((((((.((((((((((((..(((((((((((((....)))).)))))))))..)))))))))))).)))))))))))))))))))..

Structure
--        uuagaaaauaa           a            GC         -    c 
  guuuguca           uauuagguugg gcAAAAGUAAUU  GGUUUUUGu auug u
  ||||||||           ||||||||||| ||||||||||||  ||||||||| ||||  
  uaaauagu           auaauucaacc cguuuucauuaa  ccgaaaaua uaac u
uu        -----------           a            ga         g    u 


Annotation confidence Not enough data
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Genome context
NW_002923583.1: 1200-1311 [+]

Database links

Mature ppy-miR-548h

Accession MIMAT0024377
Description Pongo pygmaeus ppy-miR-548h mature miRNA
Sequence 34 - AAAAGUAAUUGCGGUUUUUG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116