Stem-loop ppy-mir-548f

Accession

MI0020926

Description

Pongo pygmaeus ppy-mir-548f precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ppy-mir-548f
(2 sentences)

Sequence

uucugaauauauacucaaaauauuagguuggugcaaaccuaauugcaauuuuugcaauuuuuuuaaguaauugCAAAAACUGUAAUUACUUUUGcaccaaccgaauacaac
....................((((.((((((((((((..((((((((.(((((((((((.........))))))))))).))))))))..)))))))))))).))))....

Structure

uucugaauauauacucaaaa    a            cc        a           uuu 
                    uauu gguuggugcaaa  uaauugca uuuuugcaauu   u
                    |||| ||||||||||||  |||||||| |||||||||||   u
                    auaa ccaaccacGUUU  AUUAAUGU AAAAACguuaa   a
----------------caac    g            UC        C           uga 

Annotation confidence Not enough data

Genome context

chr5: 111326545-111326655 [-]

Mature ppy-miR-548f

• Accession: MIMAT0024378
• Description: Pongo pygmaeus ppy-miR-548f mature miRNA
• Sequence: 74 - CAAAAACUGUAAUUACUUUUG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116