Stem-loop sequence mes-MIR172a

Accession

MI0020965 (change log)

Description

Manihot esculenta miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

4 open access papers mention mes-MIR172a
(8 sentences)

Stem-loop

       ugauc      -    g  g      u  c           acaaaacuaugaaggcuucaucgggacggugaguguacggccg 
5' ccau     agucag uauu gc gaugcg ca caucaagauuc                                           g
   ||||     |||||| |||| || |||||| || |||||||||||                                            
3' ggua     ucaguc auaa cg cuacgu gu guaguucuaag                                           c
       uaaca      u    a  g      c  a           aguaugcuuuuuccuuuggaaaauucauucuucucgguggcgg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold07991: 535333-535509 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020965

Mature sequence mes-miR172a

• Accession: MIMAT0024416
• Sequence: 132 - agaaucuugaugaugcugcau - 152
• Evidence: not experimental

References

1. "Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement" Amiteye S, Corral JM, Sharbel TF African J Biotech. 10:(2011).