Stem-loop sequence mes-MIR394a

Accession

MI0020966 (change log)

Description

Manihot esculenta miR394a stem-loop

Gene family

MIPF0000100; MIR394

Literature search

3 open access papers mention mes-MIR394a
(14 sentences)

Stem-loop

        u      a        uuu  u          -      u c           cauc   a  aa  -  uc 
5' ucaug ggguuu acaaaggg   cu acagaguuua uuggca u uguccaccucc    ugu ga  uc ug  u
   ||||| |||||| ||||||||   || |||||||||| |||||| | |||||||||||    ||| ||  || ||  c
3' agugc cucaaa uguuucuc   gg ugucucgagu aaccgu a acggguggagg    aca cu  ag ac  u
        u      a        ucu  u          c      c u           ---u   -  cg  c  uc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold09683: 173393-173543 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020966

Mature sequence mes-miR394a

• Accession: MIMAT0024417
• Sequence: 38 - uuggcauucuguccaccucc - 57
• Evidence: not experimental

References

1. "Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement" Amiteye S, Corral JM, Sharbel TF African J Biotech. 10:(2011).