miRBase entry: bta-mir-149

Stem-loop bta-mir-149


Accession
MI0021115
Description
Bos taurus bta-mir-149 precursor miRNA
Gene family
MIPF0000274; mir-149

Literature search
4 open access papers mention bta-mir-149
(6 sentences)

Sequence

1999 reads, 39 reads per million, 66 experiments
gccggcgcccaggcUCUGGCUCCGUGUCUUCACUCCCguguguguccaccgaggGAGGGAGGGACGGGGGCUGUGCuggggcggccggga
.(((((((((.(((.(.(.((((((.(((((.(((((..(((....)))...)))))))))).)))))).).).))).)))).)))))..

Structure
-g     -    a   U U G      G     A     -gu   u 
  ccggc gccc ggc C G CUCCGU UCUUC CUCCC   gug g
  ||||| |||| ||| | | |||||| ||||| |||||   |||  
  ggccg cggg uCG G C GGGGCA GGAGG GAGgg   cac u
ag     g    g   U U G      G     -     agc   c 


Annotation confidence High
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Genome context
chr3: 120921662-120921751 [+]

Database links

Mature bta-miR-149-5p

Accession MIMAT0024570
Description Bos taurus bta-miR-149-5p mature miRNA
Sequence 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
Evidence experimental
Illumina [1-2]

Mature bta-miR-149-3p

Accession MIMAT0024571
Description Bos taurus bta-miR-149-3p mature miRNA
Sequence 55 - GAGGGAGGGACGGGGGCUGUGC - 76
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026

  2. PubMed ID: 22298343
    Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
    Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
    J Cell Biochem (2012) 113:2098-2111