Stem-loop sequence bta-mir-2285j-1

Accession

MI0021133 (change log)

Description

Bos taurus miR-2285j-1 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285j-1
(15 sentences)

Stem-loop

   -a           -       g        --  g 
5'   uuggucaaaaa uuuguuu gguuuuuc  ca u
     ||||||||||| ||||||| ||||||||  || u
3'   aaccgguuuuu aagcaag ccaaaaag  gu g
   cc           c       a        uu  a 

Deep sequencing

3731 reads, 13.4 reads per million, 67 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr17: 1356425-1356493 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075D46E_9913
• miRBase Tracker:MI0021133

Mature sequence bta-miR-2285j

• Accession: MIMAT0024585
• Sequence: 41 - aaaaaccagaacgaacuuuuug - 62
• Deep sequencing: 7441 reads, 66 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285j

References

1. PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).