Stem-loop sequence bta-mir-2285j-2

Accession

MI0021134 (change log)

Description

Bos taurus miR-2285j-2 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285j-2
(15 sentences)

Stem-loop

   gc      c           c   -   -  ----g  --u  uau 
5'   auuggg uggccaaaaag uuc uuc gg     cu   cc   a
     |||||| ||||||||||| ||| ||| ||     ||   ||    
3'   ugaccc accgguuuuuc aag aag cc     ga   gg   a
   ca      a           -   c   a  aaaaa  cau  uag 

Deep sequencing

3752 reads, 10.6 reads per million, 66 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr23: 3219072-3219156 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A5BA_9913
• miRBase Tracker:MI0021134

Mature sequence bta-miR-2285j

• Accession: MIMAT0024585
• Sequence: 51 - aaaaaccagaacgaacuuuuug - 72
• Deep sequencing: 7441 reads, 66 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285j

References

1. PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).