miRBase entry: nta-MIR156b

Stem-loop nta-MIR156b


Accession
MI0021320
Description
Nicotiana tabacum nta-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
7 open access papers mention nta-MIR156b
(22 sentences)

Sequence

uuaaaggaggUGACAGAAGAGAGUGAGCACccaugguguuuucuuacaugagauauauauucaugcuugaagcuaugcgugcucacucucuaucugucacccacuguuuuc
....((..((((((((((((((((((((((.((((((...(((...((((((.......))))))...))))))))).))))))))))))).)))))))))..))......

Structure
--uuaa  ga         -             c      guu   uua      au 
      ag  ggUGACAGA AGAGAGUGAGCAC cauggu   uuc   caugag  a
      ||  ||||||||| ||||||||||||| ||||||   |||   ||||||  u
      uc  ccacugucu ucucucacucgug guaucg   aag   guacuu  a
cuuuug  ac         a             c      ---   uuc      au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR156b

Accession MIMAT0024630
Description Nicotiana tabacum nta-miR156b mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28