miRBase entry: nta-MIR168d

Stem-loop nta-MIR168d


Accession
MI0021355
Description
Nicotiana tabacum nta-MIR168d precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
3 open access papers mention nta-MIR168d
(3 sentences)

Sequence

ggucucuaauUCGCUUGGUGCAGGUCGGGAAcugacucgccggugacgcuguccgcgccggaaucggcgccuuucauugauauuuuguuuauauguaucgauauuuagagagcucucauuaggacuuauuuguuaguaaaauuuuguuguugaaauuaacuugauauauguauagauaaguagaguguuuaccccugguugguuaaguaauagauauguagagaguguuuacccacgguugguuaaguaauggauauguagagaguucaauuuuuuuaauagauuaguuaugaaugaaagugcgccucgucgauggcuaaguuuguucccgccuugcaucaacugaauuggugaccgc
((((.((((((((.((((((((((.(((((((.((((.((((.(((((...((((...))))...(((((((((((((.(((.((.((((((.....((........))((((((((......((((((((((..(((..(((..((((.......))))..))).)))..))))))))))............((..((((.((((.((((......(((((.....))))).....)))).)))).)))))).......))))))))..........)))))).)).))).)))))))).))))).))))).))))..)))).))))))).)))))))))).)))))))).))))..

Structure
--    u        C          U       u    -c    g     cuguccgcgccggaauc     -        g   u  u      auguaucgauauuuaga        -------------------------------------------------------------------------auuagg          ua   aa   uu    uu 
  gguc cuaauUCG UUGGUGCAGG CGGGAAc gacu  gccg ugacg                 ggcgc cuuucauu aua uu guuuau                 gagcucuc                                                                               acuuauuugu  gua  auu  guug  g
  |||| |||||||| |||||||||| ||||||| ||||  |||| |||||                 ||||| |||||||| ||| || ||||||                 ||||||||                                                                               ||||||||||  |||  |||  ||||  a
  ccag gguuaagu aacuacguuc gcccuug uuga  cggu gcugc                 ccgcg gaaaguaa uau ga uagaua                 cuugagag                                                                               ugaauagaua  uau  uag  caau  a
cg    u        c          c       u    au    a     ----------------u     u        g   u  u      -------auuuuuuuaa        auguauagguaaugaauugguuggcacccauuugugagagauguauagauaaugaauugguugguccccauuugugaga          ug   -a   uu    ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR168d

Accession MIMAT0024665
Description Nicotiana tabacum nta-miR168d mature miRNA
Sequence 11 - UCGCUUGGUGCAGGUCGGGAA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28